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short oligonucleotide arrays  (CombiMatrix)

 
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    CombiMatrix short oligonucleotide arrays
    Short Oligonucleotide Arrays, supplied by CombiMatrix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/short oligonucleotide arrays/product/CombiMatrix
    Average 90 stars, based on 1 article reviews
    short oligonucleotide arrays - by Bioz Stars, 2026-05
    90/100 stars

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    a, b: Theoretical outcomes of probe hybridization . A) Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. Because of the short probe length, a SNP falling in the middle of the probe sequence will result in that probe's failure to hybridize. B) Three potential hybridization scenarios within a single probe set are depicted: 1) mRNA to target probes is not expressed in either breed, 2) mRNA to target probes is equivalent in both breeds or, 3) intensity of probes is expressed in one breed and negligible in the other breed. In this latter case, a probe-by-breed effect is seen with Meishan RNA hybridized to probe 2 of the probe set. The green hash represents the SFP located within a central nucleotide position within the probe.

    Journal: BMC Genomics

    Article Title: Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

    doi: 10.1186/1471-2164-9-252

    Figure Lengend Snippet: a, b: Theoretical outcomes of probe hybridization . A) Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. Because of the short probe length, a SNP falling in the middle of the probe sequence will result in that probe's failure to hybridize. B) Three potential hybridization scenarios within a single probe set are depicted: 1) mRNA to target probes is not expressed in either breed, 2) mRNA to target probes is equivalent in both breeds or, 3) intensity of probes is expressed in one breed and negligible in the other breed. In this latter case, a probe-by-breed effect is seen with Meishan RNA hybridized to probe 2 of the probe set. The green hash represents the SFP located within a central nucleotide position within the probe.

    Article Snippet: Rostoks et al. [ ] reported an average of 35–40% FDR to detect SFPs using cRNA hybridized to Affymetrix barley gene expression short oligonucleotide arrays.

    Techniques: Hybridization, Expressing, Sequencing

    a, b: Theoretical outcomes of probe hybridization . A) Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. Because of the short probe length, a SNP falling in the middle of the probe sequence will result in that probe's failure to hybridize. B) Three potential hybridization scenarios within a single probe set are depicted: 1) mRNA to target probes is not expressed in either breed, 2) mRNA to target probes is equivalent in both breeds or, 3) intensity of probes is expressed in one breed and negligible in the other breed. In this latter case, a probe-by-breed effect is seen with Meishan RNA hybridized to probe 2 of the probe set. The green hash represents the SFP located within a central nucleotide position within the probe.

    Journal: BMC Genomics

    Article Title: Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

    doi: 10.1186/1471-2164-9-252

    Figure Lengend Snippet: a, b: Theoretical outcomes of probe hybridization . A) Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. Because of the short probe length, a SNP falling in the middle of the probe sequence will result in that probe's failure to hybridize. B) Three potential hybridization scenarios within a single probe set are depicted: 1) mRNA to target probes is not expressed in either breed, 2) mRNA to target probes is equivalent in both breeds or, 3) intensity of probes is expressed in one breed and negligible in the other breed. In this latter case, a probe-by-breed effect is seen with Meishan RNA hybridized to probe 2 of the probe set. The green hash represents the SFP located within a central nucleotide position within the probe.

    Article Snippet: Recently, chip-based methods [ - ] (and references [ - ]) such as Affymetrix gene expression arrays have been used for SNP discovery Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA.

    Techniques: Hybridization, Expressing, Sequencing